Uses a BED file of domains or TAD boundaries to merge the bin counts of a Hi-C matrix.
In this matrix only contains the total counts in each TAD and its total contacts of all other TADs.
usage: hicMergeTADbins [-h] --matrix MATRIX --domains DOMAINS --outFile OUTFILE
|–matrix, -m||Path to Hi-C matrix to use|
|–domains||Path to a bed file containing the domains.|
|–outFile, -o||Name for the resulting matrix file.|