Merges bins from a Hi-C matrix. For example, using a matrix containing 5bk bins, a matrix of 50 kb bins can be derived.

usage: hicMergeMatrixBins [-h] --matrix .h5 fileformat --numBins int
                          [--runningWindow] --outFileName OUTFILENAME
optional arguments
--matrix, -m Matrix to reduce.
--numBins, -nb Number of bins to merge.
 set to merge for using a running window of length –numBins
--outFileName, -o
 File name to save the resulting matrix. The output is also a .h5 file. But don’t add the suffix
--version show program’s version number and exit