hicInfo

Prints information about a matrix including size, number of elements, sum of elements, etc.

usage: hicInfo [-h] --matrices .h5 of .npz file format
               [.h5 of .npz file format ...] [--version]
optional arguments
--matrices, -m matrices to add. Must have the same shape.
--version show program’s version number and exit

An example output looks like this:

File:        hic_matrix.h5
WARNING: bin size is not homogeneous. Median 434
Size:        339,684
Sum: 243,779,407
Bin length:  434
Chromosomes: 2L, 2R, 3L, 3R, 4, X
Non-zero elements:   229,122,848
Minimum:     0
Maximum:     2116
NaN bins:    0