hicMergeTADbins¶
Uses a BED file of domains or TAD boundaries to merge the bin counts of a Hi-C matrix per TAD.
The output matrix contains the total counts per TAD and the total contacts with all other TADs.
usage: hicMergeTADbins [-h] --matrix MATRIX --domains DOMAINS --outFile
OUTFILE [--version]
Named Arguments¶
- --matrix, -m
Path to Hi-C matrix to use.
- --domains
Path to a bed file containing the domains.
- --outFile, -o
Name for the resulting matrix file.
- --version
show program’s version number and exit