hicHyperoptDetectLoops¶
usage: hicHyperoptDetectLoops --matrix MATRIX --proteinFile PROTEINFILE
--maximumNumberOfLoops MAXIMUMNUMBEROFLOOPS
[--outputFileName OUTPUTFILENAME]
[--resolution RESOLUTION] [--threads THREADS]
[--runs RUNS] [--help] [--version]
Required arguments¶
- --matrix, -m
The matrix to compute the loops on.
- --proteinFile, -p
The protein file to validate the detected loops
- --maximumNumberOfLoops, -ml
The maximum number of loops that should be used for optimization computation.
- --outputFileName, -o
File names for the result of the optimization.
Default: “hyperopt_result.txt”
Optional arguments¶
- --resolution, -re
Resolution of matrix
Default: 10000
- --threads, -t
Number of threads (uses the python multiprocessing module).
Default: 4
- --runs, -r
Number of runs of hyperopt.
Default: 100
- --version
show program’s version number and exit