hicInfo

Prints information about a matrix or matrices including matrix size, number of elements, sum of elements, etc. An example usage is: $ hicInfo -m matrix1.h5 matrix2.h5 matrix3.h5

usage: hicInfo --matrices MATRICES [MATRICES ...] [--outFileName OUTFILENAME]
               [--help] [--version]

Required arguments

–matrices, -m

The matrix (or multiple matrices) to get information about. HiCExplorer supports the following file formats: h5 (native HiCExplorer format) and cool.

Optional arguments

–outFileName, -o
	File name to save information of the matrix instead of writing it to the bash.
–version	show program’s version number and exit

An example output looks like this:

File:        hic_matrix.h5
WARNING: bin size is not homogeneous. Median 434
Size:        339,684
Sum: 243,779,407
Bin length:  434
Chromosomes: 2L, 2R, 3L, 3R, 4, X
Non-zero elements:   229,122,848
Minimum:     0
Maximum:     2116
NaN bins:    0