hicMergeTADbins

Uses a BED file of domains or TAD boundaries to merge the bin counts of a Hi-C matrix.

In this matrix only contains the total counts in each TAD and its total contacts of all other TADs.

usage: hicMergeTADbins [-h] --matrix MATRIX --domains DOMAINS --outFile
                       OUTFILE

Named Arguments

–matrix, -m	Path to Hi-C matrix to use
–domains	Path to a bed file containing the domains.
–outFile, -o	Name for the resulting matrix file.