hicQC

Tabulates and plots QC measures from hicBuildMatrix log files.

usage: hicQC --logfiles matrix1.h5 matrix2.h5 --labels "sample 1" "sample 2" -outFile QC.txt)
optional arguments
--logfiles, -l Path to the log files to be processed
--labels Label to assign to each log file. Each label should be separated by a space. Quote labels that contain spaces: E.g. –labels label1 “labels 2”
--outputFolder, -o
 Several files with be saved under this folder: A table containing the results and a html file with several images.
--version show program’s version number and exit