hicCorrectMatrix

Takes two matrices, normalizes them and appliesthe given operation. To normalize the matrices each element is divided by sum of the matrix.

usage: hicCompareMatrices [-h] --matrices .h5 file format .h5 file format
                          --outFileName OUTFILENAME --operation OPERATION
                          [--version]
optional arguments
--matrices, -m matrices to use.
--outFileName, -o
 File name to save the resulting matrix. The output is also a .h5 file.
--operation Operation to apply for the matrices. Options are: diff, ratio, log2ratio
--version show program’s version number and exit