hicMergeTADbins¶
Uses a BED file of domains or TAD boundaries to merge the bin counts of a Hi-C matrix.
In this matrix only contains the total counts in each TAD and its total contacts of all other TADs.
usage: hicMergeTADbins [-h] --matrix MATRIX --domains DOMAINS --outFile
OUTFILE
Named Arguments¶
–matrix, -m | Path to Hi-C matrix to use |
–domains | Path to a bed file containing the domains. |
–outFile, -o | Name for the resulting matrix file. |